Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs147198361 | chr3:53908041 | C/T | 6.33E-15 | 483 | 16.07 | 16.77 | 10.35 | KM Plot |
| THCA | rs147206146 | chr2:48120492 | CAT/C | 4.85E-8 | 490 | 15.23 | 19.47 | 8.27 | KM Plot |
| THCA | rs147327175 | chr7:30157472 | C/CAGATT | 8.12E-5 | 481 | 15.17 | 16.63 | 12.23 | KM Plot |
| THCA | rs147327353 | chr14:59709316 | C/G | 2.57E-8 | 486 | 16.07 | 14.9 | 5.1 | KM Plot |
| THCA | rs147355245 | chr10:104646089 | C/CT | 5.14E-8 | 475 | 15.33 | 17.33 | 19.1 | KM Plot |
| THCA | rs147389275 | chr6:28378746 | CTTCTT/C | 9.41E-8 | 490 | 15.68 | 16.93 | 16.47 | KM Plot |
| THCA | rs147456421 | chr2:28993044 | G/A | 9.92E-5 | 490 | 15.93 | 16.33 | 14.98 | KM Plot |
| THCA | rs147504208 | chr1:91850826 | C/CA | 8.22E-6 | 487 | 15.67 | 17.03 | 17.77 | KM Plot |
| THCA | rs1475406 | chr10:7830319 | G/C | 3.49E-6 | 486 | 17.77 | 16.6 | 15.63 | KM Plot |
| THCA | rs1475740 | chr13:108843999 | T/C | 9.31E-10 | 472 | 13.77 | 17.37 | 15.17 | KM Plot |
| THCA | rs147623212 | chr5:96203541 | C/T | 4.9E-10 | 485 | 15.17 | 20.43 | 20.6 | KM Plot |
| THCA | rs147700372 | chr6:24422220 | T/C | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs1477278 | chr5:180674978 | T/G | 8.07E-6 | 485 | 15.9 | 16.65 | 11.7 | KM Plot |
| THCA | rs147737787 | chr14:59755632 | TTTG/T | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs147854084 | chr10:81717524 | G/A | 0.0002 | 489 | 15.97 | 15.9 | 13.5 | KM Plot |